Interactive calculator
Results
Data source and methodology
Authoritative sources:
- Thermo Scientific, NanoDrop One/OneC Spectrophotometers User Guide (2017). PDF
- Sambrook J., Russell D. W. Molecular Cloning: A Laboratory Manual, 3rd ed. Cold Spring Harbor Laboratory Press (2001).
- IDT (Integrated DNA Technologies), “Calculating Molarity, Mass, and Copy Number.” Tool and documentation
Tutti i calcoli si basano rigorosamente sulle formule e sui dati forniti da questa fonte.
The formula explained
Glossary of variables
- A260: Absorbance at 260 nm.
- Path length (l): Optical path in cm used during measurement.
- Dilution factor (D): Fold dilution prior to reading (≥1).
- Factor (F): µg/mL per A260 at 1 cm; dsDNA 50, ssDNA 33, RNA 40.
- Fragment length: Size of the nucleic acid (bp for dsDNA, nt for ssDNA/RNA).
- Mass concentration: Reported as ng/µL and µg/mL (same numeric value).
- Molar concentration: Reported as nM, requires fragment length and molecular weight model.
- Purity ratios: 260/280 and 260/230, indicative of protein and reagent contamination respectively.
How it works: a step‑by‑step example
Scenario: dsDNA plasmid, A260 = 0.20, path length = 1.0 cm, dilution = 10×, fragment length = 3000 bp.
- Normalize A260 to 1 cm: A260/l = 0.20 / 1.0 = 0.20.
- Mass concentration (µg/mL): F × A260/l × D = 50 × 0.20 × 10 = 100 µg/mL = 100 ng/µL.
- MW ≈ 660 × 3000 = 1,980,000 g/mol.
- nM = (100 ng/µL × 10^6) / 1,980,000 ≈ 50.51 nM.
- Copies/µL = 50.51 × 6.022×10^8 ≈ 3.04×10^10 copies/µL.
Frequently asked questions (FAQ)
What purity ratios should I expect?
Typical pure values: dsDNA 260/280 ≈ 1.8, RNA ≈ 2.0. 260/230 should be ~2.0–2.4. Lower values suggest contaminants (proteins, salts, phenol, guanidinium).
Does path length matter with microvolume instruments?
Yes. Enter the instrument’s path length (often 0.05–0.2 cm). The calculator normalizes A260 to 1 cm before applying the factor.
How accurate are the universal factors (50/33/40)?
They are widely accepted approximations for average base composition. For oligos or unusual compositions, use a custom factor or sequence-specific ε for higher accuracy.
Why do nM and copies/µL require length?
Molarity depends on molecular weight, which scales with length. Without length, only mass concentration can be computed from A260.
Can I enter negative absorbance or extremely high values?
No. Absorbance must be ≥ 0. Values above instrument linearity (often ~2–3 A) can be inaccurate; dilute samples to stay within range.
Will this work for dsRNA or modified nucleic acids?
Use the closest model (RNA for dsRNA) or a custom factor. For heavily modified bases, sequence-specific extinction coefficients yield better results.